# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "BRGenomics" in publications use:' type: software license: Artistic-2.0 title: 'BRGenomics: Tools for the Efficient Analysis of High-Resolution Genomics Data' version: 1.17.1 doi: 10.32614/CRAN.package.BRGenomics abstract: 'This package provides useful and efficient utilites for the analysis of high-resolution genomic data using standard Bioconductor methods and classes. BRGenomics is feature-rich and simplifies a number of post-alignment processing steps and data handling. Emphasis is on efficient analysis of multiple datasets, with support for normalization and blacklisting. Included are functions for: spike-in normalizing data; generating basepair-resolution readcounts and coverage data (e.g. for heatmaps); importing and processing bam files (e.g. for conversion to bigWig files); generating metaplots/metaprofiles (bootstrapped mean profiles) with confidence intervals; conveniently calling DESeq2 without using sample-blind estimates of genewise dispersion; among other features.' authors: - family-names: DeBerardine given-names: Mike email: mike.deberardine@gmail.com repository: https://bioc.r-universe.dev repository-code: https://github.com/mdeber/BRGenomics commit: bd27ed17947746a6a91df63288f1e317bb6e2241 url: https://mdeber.github.io contact: - family-names: DeBerardine given-names: Mike email: mike.deberardine@gmail.com