Package: BEclear
Type: Package
Title: Correction of batch effects in DNA methylation data
Version: 2.29.2
Date: 2026-09-14
Authors@R: c(person("Livia", "Rasp", email = "livia.rasp@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-0164-2163")),
             person("Markus", "Merl", role = "aut"),
             person("Ruslan", "Akulenko", role = "aut"))
Description: Provides functions to detect and correct for batch effects
        in DNA methylation data. The core function is based on latent
        factor models and can also be used to predict missing values in
        any other matrix containing real numbers.
License: GPL-3
Depends: BiocParallel (>= 1.14.2)
Imports: logger, Rdpack, Matrix, data.table (>= 1.11.8), Rcpp, abind,
        stats, graphics, utils, methods, dixonTest, ids
Suggests: testthat, BiocStyle, knitr, rmarkdown, pander, seewave
VignetteBuilder: knitr
biocViews: BatchEffect, DNAMethylation, Software, Preprocessing,
        StatisticalMethod
RdMacros: Rdpack
Encoding: UTF-8
URL: https://github.com/uds-helms/BEclear
BugReports: https://github.com/uds-helms/BEclear/issues
LinkingTo: Rcpp
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-15 17:46:08 UTC
RemoteUrl: https://github.com/bioc/BEclear
RemoteRef: HEAD
RemoteSha: 6f8c4e939f9cde0fc215f33fc6b69f1bb58d87a8
NeedsCompilation: yes
Packaged: 2026-09-16 00:38:24 UTC; root
Author: Livia Rasp [aut, cre] (ORCID: <https://orcid.org/0000-0003-0164-2163>),
  Markus Merl [aut],
  Ruslan Akulenko [aut]
Maintainer: Livia Rasp <livia.rasp@gmail.com>