Package: BERT
Title: High Performance Data Integration for Large-Scale Analyses of
        Incomplete Omic Profiles Using Batch-Effect Reduction Trees
        (BERT)
Version: 1.9.0
Authors@R: 
    c(person("Yannis", "Schumann", ,"yannis.schumann@desy.de", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2379-200X")),
           person("Simon", "Schlumbohm", , "schlumbohm@hsu-hh.de", role = c("aut"),
           comment = c(ORCID = "0000-0002-0083-5142")))
Description: Provides efficient batch-effect adjustment of data with
        missing values. BERT orders all batch effect correction to a
        tree of pairwise computations. BERT allows parallelization over
        sub-trees.
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: BatchEffect, Preprocessing, ExperimentalDesign,
        QualityControl
URL: https://github.com/HSU-HPC/BERT/
BugReports: https://github.com/HSU-HPC/BERT/issues
License: GPL-3
Depends: R (>= 4.3.0)
Imports: cluster, comprehenr, foreach (>= 1.5.2), invgamma, iterators
        (>= 1.0.14), janitor (>= 2.2.0), limma (>= 3.46.0), logging (>=
        0.10-108), sva (>= 3.38.0), SummarizedExperiment, methods,
        BiocParallel
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:02:01 UTC
RemoteUrl: https://github.com/bioc/BERT
RemoteRef: HEAD
RemoteSha: 072dd1e1eb9583b9687f26288ed3c12b6460fdb3
NeedsCompilation: no
Packaged: 2026-06-20 06:35:53 UTC; root
Author: Yannis Schumann [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2379-200X>),
  Simon Schlumbohm [aut] (ORCID: <https://orcid.org/0000-0002-0083-5142>)
Maintainer: Yannis Schumann <yannis.schumann@desy.de>