Package: AnnotationForge
Title: Tools for building SQLite-based annotation data packages
Description: Provides code for generating Annotation packages and their
        databases.  Packages produced are intended to be used with
        AnnotationDbi.
biocViews: Annotation, Infrastructure
URL: https://bioconductor.org/packages/AnnotationForge
BugReports: https://github.com/Bioconductor/AnnotationForge/issues
Version: 1.55.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
        person("Marc", "Carlson", role = "aut"),
        person("Hervé", "Pagès", role = "aut"),
        person("Madelyn", "Carlson", role = "ctb",
                comment = "'Creating probe packages' vignette translation from Sweave to Rmarkdown / HTML"),
        person("Bioconductor Package Maintainer", role = "cre",
                email = "maintainer@bioconductor.org")
        )
Depends: R (>= 3.5.0), methods, utils, BiocGenerics (>= 0.15.10),
        Biobase (>= 1.17.0), AnnotationDbi (>= 1.33.14)
Imports: DBI, RSQLite, XML, S4Vectors, RCurl
Suggests: biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy,
        hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db,
        rmarkdown, BiocStyle, knitr, BiocManager, BiocFileCache, RUnit
VignetteBuilder: knitr
BuildKeepEmpty: TRUE
Collate: makeAnnDbPkg.R sqlForge_utils.R sqlForge_baseMapBuilder.R
        sqlForge_schemaGen.R sqlForge_tableBuilder.R
        sqlForge_makeAnnPkgs.R sqlForge_wrapBaseDBPkgs.R
        sqlForge_seqnames.R makeProbePackage.R makeOrgPackage.R
        makeChipPackageFromDataFrames.R makeOrgPackageFromNCBI.R
        NCBI_getters.R makeInparanoidDbs.R
        test_AnnotationForge_package.R
Date: 2024-10-28
Config/pak/sysreqs: make libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:36:38 UTC
RemoteUrl: https://github.com/bioc/AnnotationForge
RemoteRef: HEAD
RemoteSha: 2dc63602d17c03cb71de398fd524b9a625178235
NeedsCompilation: no
Packaged: 2026-06-17 07:40:27 UTC; root
Author: Marc Carlson [aut],
  Hervé Pagès [aut],
  Madelyn Carlson [ctb] ('Creating probe packages' vignette translation
    from Sweave to Rmarkdown / HTML),
  Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>