To cite package ‘AneuFinder’ in publications use:

  Bakker, B., Taudt, A., Belderbos, M. E., Porubsky, D., Spierings, D.
  C. J., de Jong, T. V., ... Foijer, F. (2016). Single-cell sequencing
  reveals karyotype heterogeneity in murine and human malignancies.
  Genome Biology, 17(1), 115. doi:10.1186/s13059-016-0971-7

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies},
    author = {Bjorn Bakker and Aaron Taudt and Mirjam E. Belderbos and David Porubsky and Diana C.J. Spierings and Tristan V. {de Jong} and Nancy Halsema and Hinke G. Kazemier and Karina Hoekstra-Wakker and Allan Bradley and Eveline S.J.M. {de Bont} and Anke {van den Berg} and Victor Guryev and Peter M. Lansdorp and Maria Colome-Tatche and Floris Foijer},
    year = {2016},
    journal = {Genome Biology},
    volume = {17},
    month = {may},
    number = {1},
    pages = {115},
    doi = {10.1186/s13059-016-0971-7},
    url = {http://doi.org/10.1186/s13059-016-0971-7},
  }