Changes in version 1.24.0                        

New Features

  - (v. 1.23.1) Add dry.run argument to add_access(), as_notebook(), and
    as_workspace() to allow local processing and previewing without
    making remote changes in AnVIL.

  - (v. 1.23.3) Add AnVILBase to Suggests.

Significant User-Visible Changes

  - (v. 1.23.1) Remove legacy support for python notedown conversion. A
    system installation of Quarto is now required to convert .Rmd to
    .ipynb notebooks, and a clear error is thrown if it is not found.

  - (v. 1.23.1) Add quarto-cli to SystemRequirements in DESCRIPTION.

  - (v. 1.23.1) Add URL and BugReports fields to DESCRIPTION.

  - (v. 1.23.1) Add funding (fnd) role and grant number to package
    authors.

Bug Fixes

  - (v. 1.23.1) Handle lowercase .rmd extensions in as_notebook().

                       Changes in version 1.22.0                        

New Features

  - (v. 1.21.1) Export create_workspace() for creating a new AnVIL
    workspace without necessarily populating it from an R package.

                       Changes in version 1.20.0                        

Significant User-Visible Changes

  - (v. 1.19.0) Update to use GCPtools for gcloud checks.

                       Changes in version 1.18.0                        

  - No significant changes.

                       Changes in version 1.16.0                        

Significant User-Visible Changes

  - (v. 1.15.0) Use AnVILGCP for storage and copying functions,
    replacing AnVIL usage.

Documentation

  - (v. 1.15.0) Use README.Rmd script for README.md.

  - (v. 1.15.2) Update AnVILPublishIntro.Rmd and README.md.

                       Changes in version 1.14.0                        

New Features

  - (v. 1.13.2) Move BiocManager to Imports as it is used in code.

  - (v. 1.13.1) Use BiocBaseUtils for internal utility functions.

Documentation

  - (v. 1.13.0) Add a note to the vignette clarifying that only Google
    Cloud Platform workspaces are supported.

                       Changes in version 1.12.0                        

Bug Fixes

  - (v. 1.11.3) Link Rmd (and / or ipynb) vignettes to dashboard

                       Changes in version 1.10.0                        

  - (v. 1.11.1) Remove support for notedown Python module conversion.

                        Changes in version 1.8.0                        

New Features

  - (v. 1.7.1) Support publication output '.Rmd'

  - (v. 1.7.2) Support 'Quarto' for Rmd to ipynb conversion

  - (v. 1.7.3) Support 'Qmd' files.

User Visible Changes

  - (v. 1.7.4) Update workspace publication -- put 'Description'
    directly under title so it appears in WORKSPACE summary; add current
    'Date' to citation if not already defined.

Bug Fixes

  - (v. 1.7.4) Workspace dashboard and startup link to notebooks in
    'analysis' rather than 'notebook' location; clean up vignette author
    list.

                        Changes in version 1.4.0                        

New Features

  - (v. 1.3.2) Support _bookdown.yml -- name and order vignettes

                        Changes in version 1.2.0                        

New Features

  - Include README.md on Workspace landing page (thanks Vince Carey).

Bug Fixes

  - as_workspace() correctly passes an unboxed 'description' attribute
    when setting the dashboard.

                       Changes in version 0.0.10                        

  - Add 'best practices' and rationale for Rmarkdown-to-jupyter notebook
    conversion.

                        Changes in version 0.0.9                        

  - Create a notebook '00-<<workspace name>>' to install package / book
    dependencies specified in the original source.
  - Don't link to vignettes from the DASHBOARD, since the namespace
    changes in cloned workspaces.
  - as_workspace(..., create = FALSE, update=FALSE) now evaluates code,
    silently.

                        Changes in version 0.0.8                        

  - Support collections of Rmd files that are not packages, e.g.,
    bookdown sites.
  - Add R / Bioconductor version to dashboard

                        Changes in version 0.0.7                        

  - Revise Rmd-to-ipynb work flow
    
      - Don't evaluate code chunks (avoids including output in notebook,
        and side-effects because rmarkdown::render does not start a
        separate process)
      - Insert metadata to use the R kernel. jupytext can do this more
        elegantly, but does from .md renders code chunks and
        pre-formatted rather than evaluation cells, and from .Rmd does
        not process markdown well enough, e.g., not suppporting
        [foo][]-style links when the definition is elsewhere in the
        document.

                        Changes in version 0.0.6                        

  - Added a NEWS.md file to track changes to the package.

  - Extensive interface renaming
    
      - as_workspace() (formerly package_source_as_workspace())
      - as_notebook() (formerly vignettes_to_notebooks())
      - add_access() (formerly bioconductor_user_access())