NEWS
AllelicImbalance 1.12.0
AllelicImbalance 1.10.0
NEW FEATURES
- minFreqFilt and minCountFilt
SIGNIFICANT USER-VISIBLE CHANGES
- The Phase2Genotype function now treats phase 0 as the ref allele and
phase 1 as the alternative allele.
AllelicImbalance 1.8.0
NEW FEATURES
- genotype accessor requires reference and alternative allele information
- genotype setter requires reference allele information
- reference fraction is now accessed through fraction(ASEset, top.allele.criteria="ref")
- for a more robust performance unit tests are now covering the most crucial calculations, such as e.g. fraction, frequency, summary, mapbias and phase specific calculations.
AllelicImbalance 1.6.0
NEW FEATURES
- ASEset slot for Phase information
- generation of masked reference genomes
- calculation of reference fraction 'refFraction'
AllelicImbalance 1.2.0
NEW FEATURES
BUG FIXES
- Fixed bug in the "realCigarPosition" function, that otherwise could generate an error.