NEWS

---

ATACseqTFEA 1.5.1

• add function importFimoBindingSites.

ATACseqTFEA 1.1.1

• fix the bugs in sample_scripts.R.

ATACseqTFEA 0.99.9

• Change filename privateUtility to internal-utils.

ATACseqTFEA 0.99.8

• Use ggsave to replace print for plotES.

ATACseqTFEA 0.99.7

• add return descriptions for TFEAresults-methods.

ATACseqTFEA 0.99.6

• add BiocStyle and rmarkdown into Suggests

ATACseqTFEA 0.99.5

• update the license from 'GPL (>=2)' to 'GPL-3'
  • add additional sections with guidelines for bug report and contribution in readme.md.
  • split the class and method into three files: R/AllClasses.R, R/AllGenerics.R, and methods-TFEAresults.R.
  • simplify the show outputs for TFEAresults object
  • use loop count no more than MAX_LOOPS to control the nested loops
  • return ggplot object for the plotES function
  • break the TFEA function into multiple functions
  • update muliple documentations.

ATACseqTFEA 0.99.4

• add schematic diagram.

ATACseqTFEA 0.99.3

• replace import by importFrom.

ATACseqTFEA 0.99.2

• remove the import of utils.

ATACseqTFEA 0.99.1

• export function reduceByPercentage
  • fix the bug in vignette
  • import utils in DESCRIPTION.

ATACseqTFEA 0.99.0

• prepare for submission