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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "APL" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'APL: Association Plots'
version: 1.9.1
abstract: APL is a package developed for computation of Association Plots (AP), a
  method for visualization and analysis of single cell transcriptomics data. The main
  focus of APL is the identification of genes characteristic for individual clusters
  of cells from input data. The package performs correspondence analysis (CA) and
  allows to identify cluster-specific genes using Association Plots. Additionally,
  APL computes the cluster-specificity scores for all genes which allows to rank the
  genes by their specificity for a selected cell cluster of interest.
authors:
- family-names: Kohl
  given-names: Clemens
  email: kohl.clemens@gmail.com
- family-names: Gralinska
  given-names: Elzbieta
  email: gralinska@molgen.mpg.de
- family-names: Vingron
  given-names: Martin
  email: vingron@molgen.mpg.de
preferred-citation:
  type: article
  title: Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data
    Using Association Plots
  authors:
  - family-names: Elzbieta
    given-names: Gralinska
  - family-names: Clemens
    given-names: Kohl
  - family-names: Bita
    given-names: Sokhandan Fadakar
  - family-names: Martin
    given-names: Vingron
  year: '2022'
  journal: Journal of Molecular Biology
repository: https://bioc.r-universe.dev
url: https://vingronlab.github.io/APL/
contact:
- family-names: Kohl
  given-names: Clemens
  email: kohl.clemens@gmail.com