To cite ALDEx2 in publications use, use any of the first three citations. To cite scale simulation, please use the last reference (Nixon et. al. (2022)).

Fernandes, AD, Macklaim, JM, Linn, TG, Reid, G, Gloor, GB (2013). “*** ANOVA-Like Differential Gene Expression Analysis of Single-Organism and Meta-RNA-Seq.” *** PLoS ONE, 2013, volume 8, issue 7, e67019. *** http://dx.doi.org/10.1371/journal.pone.0067019.

Fernandes, D. A, Reid, J., Macklaim, M. J, McMurrough, T.A, Edgell, D.R., Gloor, B. G (2014). “*** Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis.” *** Microbiome, 2014, volume 2, 15. *** http://dx.doi.org/10.1186/2049-2618-2-15.

Gloor GB, Macklaim JM, Fernandes AD (2016). “*** Displaying Variation in Large Datasets: a Visual Summary of Effect Sizes.” *** Journal of Computational and Graphical Statistics,. *** http://dx.doi.org/10.1080/10618600.2015.1131161.

Nixon MP, Letourneau J, David LA, Mukherjee S, Silverman JD (2022). “*** A Statistical Analysis of Compositional Surveys.” *** ArVix Preprint: 2201.03616,. *** https://arxiv.org/abs/2201.03616.

Corresponding BibTeX entries:

  @Article{,
    title = {*** ANOVA-Like Differential Gene Expression Analysis of
      Single-Organism and Meta-RNA-Seq},
    author = {{Fernandes} and {AD} and {Macklaim} and {JM} and {Linn}
      and {TG} and {Reid} and {G} and {Gloor} and {GB}},
    journal = {*** PLoS ONE, 2013, volume 8, issue 7, e67019},
    isbn = {*** 3-900051-07-0},
    year = {2013},
    url = {*** http://dx.doi.org/10.1371/journal.pone.0067019},
  }

  @Article{,
    title = {*** Unifying the analysis of high-throughput sequencing
      datasets: characterizing RNA-seq, 16S rRNA gene sequencing and
      selective growth experiments by compositional data analysis},
    author = {{Fernandes} and A. D. and {Reid} and {J.} and {Macklaim}
      and J. M. and {McMurrough} and {T.A} and {Edgell} and {D.R.} and
      {Gloor} and G. B.},
    journal = {*** Microbiome, 2014, volume 2, 15},
    year = {2014},
    url = {*** http://dx.doi.org/10.1186/2049-2618-2-15},
  }

  @Article{,
    title = {*** Displaying Variation in Large Datasets: a Visual
      Summary of Effect Sizes},
    author = {Gregory B. Gloor and Jean M. Macklaim and Andrew D.
      Fernandes},
    journal = {*** Journal of Computational and Graphical Statistics,},
    year = {2016},
    url = {*** http://dx.doi.org/10.1080/10618600.2015.1131161},
  }

  @Article{,
    title = {*** A Statistical Analysis of Compositional Surveys},
    author = {Michelle Pistner Nixon and Jeffrey Letourneau and
      Lawrence A. David and Sayan Mukherjee and Justin D. Silverman},
    journal = {*** ArVix Preprint: 2201.03616,},
    year = {2022},
    url = {*** https://arxiv.org/abs/2201.03616},
  }