Package: ADAM
Type: Package
Title: ADAM: Activity and Diversity Analysis Module
Version: 1.29.0
Date: 2023-04-10
Authors@R: 
    c(person(given = "André Luiz",
                 family = "Molan",
                 role = "aut",
                 email = "andre.molan@unesp.br"),
      person(given = "Giordano Bruno",
                 family = "Sanches Seco",
                 role = "ctb"),
      person(given = "Agnes",
                family = "Takeda",
                role = "ctb"),
      person(given = "Jose",
                family = "Rybarczyk Filho",
                role = c("ctb", "cre", "ths"),
                email = "jose.luiz@unesp.br")
			 )
Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz@unesp.br>
Description: ADAM is a GSEA R package created to group a set of genes
        from comparative samples (control versus experiment) belonging
        to different species according to their respective functions
        (Gene Ontology and KEGG pathways as default) and show their
        significance by calculating p-values referring togene diversity
        and activity. Each group of genes is called GFAG (Group of
        Functionally Associated Genes).
Depends: R(>= 3.5), stats, utils, methods
Imports: Rcpp (>= 0.12.18), GO.db (>= 3.6.0), KEGGREST (>= 1.20.2),
        knitr, pbapply (>= 1.3-4), dplyr (>= 0.7.6), DT (>= 0.4),
        stringr (>= 1.3.1), SummarizedExperiment (>= 1.10.1)
Suggests: testthat, rmarkdown, BiocStyle
LinkingTo: Rcpp
SystemRequirements: C++11
Encoding: UTF-8
RoxygenNote: 6.1.0
License: GPL (>= 2)
biocViews: GeneSetEnrichment, Pathways, KEGG, GeneExpression,
        Microarray
VignetteBuilder: knitr
LazyLoad: yes
NeedsCompilation: yes
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:11 UTC
RemoteUrl: https://github.com/bioc/ADAM
RemoteRef: HEAD
RemoteSha: 8f824061211964c7cfefb051e52af9724b00b00c
Packaged: 2026-06-23 16:06:12 UTC; root
Author: André Luiz Molan [aut],
  Giordano Bruno Sanches Seco [ctb],
  Agnes Takeda [ctb],
  Jose Rybarczyk Filho [ctb, cre, ths]