Package: ACE
Title: Absolute Copy Number Estimation from Low-coverage Whole Genome
        Sequencing
Description: Uses segmented copy number data to estimate tumor cell
        percentage and produce copy number plots displaying absolute
        copy numbers.
Version: 1.31.0
Author: Jos B Poell
Maintainer: Jos B Poell <j.poell@amsterdamumc.nl>
Depends: R (>= 3.4)
Imports: Biobase, QDNAseq, ggplot2, grid, stats, utils, methods,
        grDevices, GenomicRanges
biocViews: CopyNumberVariation, DNASeq, Coverage, WholeGenome,
        Visualization, Sequencing
License: GPL-2
Encoding: UTF-8
LazyData: true
URL: https://github.com/tgac-vumc/ACE
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-06-15 07:10:03 UTC; root
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:48:19 UTC
RemoteUrl: https://github.com/bioc/ACE
RemoteRef: HEAD
RemoteSha: 96f7bbae689a1ceca90f1e3b9ba7e23a37ae49f5